rs29736226 SNP Detail

Summary

• ID
  rs29736226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40642234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAATCACCC AGCCTGGCGC CTTCCGCCAG CGCAGAAGCC
  CTGCAGCTCC GAGAGTTCTG CGACTCTTTG TTTAGGGAGG AGCCCAGCCC AGCCCGGGTG
  R
  CCACCCTCGG GAGTGGCTCT GATCTTTGCC TTGCAGATCT ATAAAACTGC GGCCATGGCA
  GGGCAGCTCC GGGAGGGAGG CTGCAGGCTG CAGGAGGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46336587	mCV23404181	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss136336771	ENSMUSSNP1484856	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss322918976	CHEV_9_40539021	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29736226					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40642234 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	within coordinates
Gm68229	predicted gene, 68229	within coordinates
Gm68234	predicted gene, 68234	9 bp upstream
Rr1916	regulatory region 1916	within coordinates
Rr676903	regulatory region 676903	within coordinates
Rr676904	regulatory region 676904	20 bp proximal
Rr676905	regulatory region 676905	654 bp proximal
Rr676906	regulatory region 676906	1415 bp proximal
Tssr84462	transcription start site region 84462	16 bp upstream
Tssr84463	transcription start site region 84463	65 bp upstream