rs29736830 SNP Detail

Summary

• ID
  rs29736830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:59310294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCCCTG TTTGAACATT
  CTGGGGTTTT TAGAAACTTG CCCCACACTG AGACCTTGAA TACACCCACT AGCCCAGTGT
  GCTGTACCTC CCAGCCTATT CCCCATTCTT TGCCACACTT TAATAAAATC TATTGGCAAT
  GACACCCCAA AGGTCAGGTG AAGAAAAGGG GTAGACAGTG CATTGGACTT GTACAGACCC
  Y
  GGTACCCTCA AGCTGCATCA TACACACTAA CAGTCGAATC TGACCGGGCG ATCTTGGTTG
  CTGCAGCGTT TGAACAGATT CTAGAACTAC CCAGCCCATA CCATACAGCC ACAGCGTGAG
  GAAACTTTGT CAGTGTTAAA AGAAAGGAGC AGCTTTTTAA TCCAGATTGT CAGCAGTCCT
  GGCCAGAGAA TTTCAGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39611308	mCV23241533	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147209053	ENSMUSSNP6774487	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29736830					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:59310294 () rs orientation: forward

Symbol	Name	Function Class
Chsy3	chondroitin sulfate synthase 3	within coordinates
Cpgi10086	CpG island 10086	421 bp distal
Gm54033	predicted gene, 54033	307 bp upstream
Gm58413	predicted gene, 58413	455 bp upstream
Rr538516	regulatory region 538516	1562 bp distal
Rr538517	regulatory region 538517	89 bp distal
Tssr151236	transcription start site region 151236	1816 bp downstream
Tssr151237	transcription start site region 151237	1759 bp downstream
Tssr151238	transcription start site region 151238	1729 bp downstream