rs29736988 SNP Detail

Summary

• ID
  rs29736988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCATAAAAA TGACTGCCTC TAGCTTAAAG ATTCAGAGTA
  AATTTCCACC TATAAAAAGA AGCTGCGACG AGATTCTTGT GTACGAAACC AAGGGCAAAA
  Y
  ACTGAGGGTG GAAAGGGAAA GTATTCGCCT CAAAAGTAAA CTTTTTAATA GTACATAAAA
  TAGGAATGGG TTTAGCCCTT ACCCCACCCA CTCCTAACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46336899	mCV24902582	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss136309811	ENSMUSSNP1810174	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322906511	CHEV_9_37063764	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29736988					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	592 bp distal
Gm48081	predicted gene, 48081	30 bp downstream
Rr676656	regulatory region 676656	776 bp distal
Rr676657	regulatory region 676657	671 bp distal
Rr676658	regulatory region 676658	452 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	122 bp distal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	766 bp upstream
Tssr88821	transcription start site region 88821	815 bp upstream
Tssr88822	transcription start site region 88822	787 bp upstream
Tssr88823	transcription start site region 88823	760 bp upstream
Tssr88824	transcription start site region 88824	737 bp upstream
Tssr88825	transcription start site region 88825	718 bp upstream
Tssr88826	transcription start site region 88826	626 bp upstream
Tssr88827	transcription start site region 88827	544 bp upstream
Tssr88828	transcription start site region 88828	514 bp upstream
Tssr88829	transcription start site region 88829	496 bp upstream
Tssr88830	transcription start site region 88830	468 bp upstream
Tssr88831	transcription start site region 88831	435 bp upstream