rs29737974 SNP Detail

Summary

• ID
  rs29737974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10611745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAGGAA TTATATTAGT
  GAACCAGCCG ACTTCCATGT TAGACTTGAA AGAGCCAAAG AACCATCTTA TAGTAAAGAC
  AAGCTAGACT CACTCCTCTT TATGATTGAT TAAGCCTGTT TCTCAAGGAT TGCGCTATGC
  CCCACCTGTA GCCTTAACTA CAAATGGTTC AGTACTGCCT GTGCCAGGGA AAGGCAACCA
  Y
  ATCCTTATTT TGCAAAGTTG TTCATAAGCA TCTTGCAAGC CTACCGTTGT TTCATAGGTT
  CTTATGACTA TTGTCGCTAC GCCCACCTTG CACTCAAGTC TTTGTTTCAG AAGGTTCTTA
  TGTCTAATGT TTAACTTGTT ATGCTTACAT GCTCCTGGTA CCTGGTTTAT TTTGCCTGCC
  AACCCCCACC CCCACCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39611350	mCV27569832	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146607102	ENSMUSSNP2579239	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325524302	CHEV_18_10611743	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29737974					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10611745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1097 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	1393 bp upstream
Rr533778	regulatory region 533778	1647 bp distal
Rr533779	regulatory region 533779	1969 bp distal
Rr533780	regulatory region 533780	903 bp distal
Rr533781	regulatory region 533781	1609 bp distal
Rr533782	regulatory region 533782	1303 bp distal
Tssr152429	transcription start site region 152429	1629 bp upstream
Tssr152430	transcription start site region 152430	1601 bp upstream
Tssr152431	transcription start site region 152431	1457 bp upstream
Tssr152432	transcription start site region 152432	1433 bp upstream
Tssr152433	transcription start site region 152433	1382 bp upstream