rs29738153 SNP Detail

Summary

• ID
  rs29738153
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87611741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT GGACAGCAGA GGGTAGAGAC
  S
  GGGAAGCAGT GAGGGGGCGA TCCGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46334569	mCV24942048	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss136773414	ENSMUSSNP3320540	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323061727	CHEV_9_87624523	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29738153					SNP	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87611741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	within coordinates
D030062O11Rik	RIKEN cDNA D030062O11 gene	within coordinates
Rr684220	regulatory region 684220	1562 bp proximal
Rr684221	regulatory region 684221	1725 bp proximal
Tbx18	T-box18	within coordinates
Tssr2959	transcription start site region 2959	1549 bp downstream
Tssr90806	transcription start site region 90806	1448 bp downstream
Tssr90807	transcription start site region 90807	1475 bp downstream
Tssr90808	transcription start site region 90808	1560 bp downstream
Tssr90809	transcription start site region 90809	1586 bp downstream