rs29739025 SNP Detail

Summary

• ID
  rs29739025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99758429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGCAGGGA AGGCGAGGGG GCGCACCTGC CAACTCGCGA
  GTAGTGGAAA CCCGGAGCGT CCCTGATGGG GGCGGGGAGA GGTATGAGGG ACAGAGAGAC
  Y
  GCCACCGCGA ACAGAGCGGC TTGATAGCTC AGGATTCGGG GCGGGGGTTC ACATTGTCTC
  TGGCACTGTC AAAAAATTAA AACTCTTCGT GACCCCTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46335628	mCV25314638	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss136852102	ENSMUSSNP1368381	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323137449	CHEV_9_99776795	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29739025					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99758429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	within coordinates
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	within coordinates
Rr685463	regulatory region 685463	648 bp distal
Rr685464	regulatory region 685464	217 bp distal
Rr685465	regulatory region 685465	within coordinates
Rr685466	regulatory region 685466	1407 bp proximal
Sox14	SRY (sex determining region Y)-box 14	206 bp upstream
Tssr91083	transcription start site region 91083	183 bp upstream
Tssr91084	transcription start site region 91084	164 bp upstream