rs29739028 SNP Detail

Summary

• ID
  rs29739028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86428379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAA TTTACTTAAA ATAGTTAAAA
  R
  CAAAATAGAG AGTACTAATT TACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46335631	mCV24274720	ABI	CRAMUS_MOUSE	f	SNP		A					A		G
ss61435727	NES16815203	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A		G	G		A	G
ss136757221	ENSMUSSNP2505684	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss323056649	CHEV_9_86439933	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs29739028					SNP	G	A	A	A	G	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61435727	NES16815203	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86428379 () rs orientation: forward

Symbol	Name	Function Class
D9Mit111	DNA segment, Chr 9, Massachusetts Institute of Technology 111	187 bp proximal
Dop1a	DOP1 leucine zipper like protein A	within coordinates
Gm17530	predicted gene, 17530	356 bp downstream
Tssr86395	transcription start site region 86395	1084 bp downstream
Tssr86396	transcription start site region 86396	1057 bp downstream