rs29739829 SNP Detail

Summary

• ID
  rs29739829
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44216057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCCTGT CTCTAAAAAC
  AAAACAAAAC AAAAGTATAT AATAAGTATG TAGTTTAAAA GAACGAGAAC AAAGTGAAAG
  GTTGATGCAA AATTTCTAGG AGGGACATTA AAGGGACAAT TCTGCAGAAG TGAGATGGCT
  CAGTGGGGGA AAGCAGCTCT TGTCACACTA GCCTGACAAC CTGAATATGA CCCCAGGAAC
  M
  CCACCACCAC CATTCACTCA CATATGCTCA CACCACTAAT CAAGTGGTGG GGAACAGGGT
  GGCGTTGCCA GTCTTTGAGA CAGGATCTCT TGAGAATTTC AGGACAGCCA GAGCCACAAA
  GTTAAGATGG TCTCACAAAA AAGAAAGCCA CCACGGACAT CACATTATGT CTAAGGGTGT
  ATCTGTCTGA AGAGGAAGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46335840	mCV23032963	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
ss136393652	ENSMUSSNP1101632	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29739829					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44216057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	461 bp proximal
Hinfp	histone H4 transcription factor	within coordinates
Rr206299	regulatory region 206299	within coordinates
Rr368726	regulatory region 368726	923 bp upstream
Tssr89139	transcription start site region 89139	835 bp downstream