rs29740256 SNP Detail

Summary

• ID
  rs29740256
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6167078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAAGCC CAAAAGCTAA
  CACTGAATTT CTCTATTGTT TGTTTTGAGC CGGTATCTCT GGCTGAATCA TGAGCTTTCC
  CTTTACACAA GTTGAAATCC GGGGATCTAC CTGTTTGCGT TACACAGCAC TGGAGCTTCA
  AATGCATACC ACAGTGTGCA CAAGTGTGAC ACAAGTGTGA TGTGTGTCTT CAGGTACTTC
  R
  CTGACTGTAC CATCGCCTGT GAGCCTACTT TCTATGTTGC TTCTCTGTGT CTTTCTCCAG
  GGCAGATTAT ATACTTAAAC AGTATAAACA GATTTTTTTT TCTTCAAGGG GATTCAAATT
  TTTCAATTGT CGGTCACATC AATAGCATGT ACTTTCTTAT GCATCAGCCC ATAAAACAGT
  GATATCCATA AAGCAAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46334582	mCV22333222	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss136187903	ENSMUSSNP7098009	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29740256					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6167078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	1322 bp proximal
Pdgfd	platelet-derived growth factor, D polypeptide	1506 bp upstream
Tssr2757	transcription start site region 2757	1600 bp upstream
Tssr83664	transcription start site region 83664	1371 bp upstream
Tssr83665	transcription start site region 83665	1392 bp upstream
Tssr83666	transcription start site region 83666	1475 bp upstream
Tssr83667	transcription start site region 83667	1492 bp upstream
Tssr83668	transcription start site region 83668	1523 bp upstream
Tssr83669	transcription start site region 83669	1560 bp upstream