rs29741301 SNP Detail

Summary

• ID
  rs29741301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123621748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAAGGCC TCTGCCAAAG
  CTGCAGAACT GCTGAGCTGG GGGCACAGCT GATTTTCTTT CTTTTGCTTC TAATTTTTTA
  ATATTTAAAA TTTTGTGGAT GAGTGTGCGT GTTCATGTTT AATGAGATAG GTGAGGAGGA
  GTAGTGTTTC CTGTGGATGA TGAAGAGCTA ATTAGAGTTC AGGTACTGAT GCTATGGGAA
  R
  TCGCTTCCAT CGTAGATCAC AGGCCGGTCA ACAGTCAGGT GGTAAAGCAC TTTTTTGGAG
  ATAAATCTGA AGAAATAGAA ACGGAGAATG AATGTGTTAC TTTTAGCGCA GCTTCTTTTG
  GGGTCTCATG TCCCTGATTG TGCTTGGCTG GGTGTAGGAA CCAAAGTCTC GAAGGAACCA
  GCCTTTGGGG ACCGGACAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss46335955	mCV23332203	ABI	CRAMUS_MOUSE	f	SNP		G	A	A		A
ss61241400	NES16861468	PERLEGEN	MM_PANEL2	f	SNP	G				A		G	A
ss137081810	ENSMUSSNP915526	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs29741301					SNP	G	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61241400	NES16861468	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123621748 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	617 bp upstream
Tssr92158	transcription start site region 92158	611 bp upstream
Tssr92159	transcription start site region 92159	587 bp upstream
Tssr92160	transcription start site region 92160	212 bp upstream
Tssr92161	transcription start site region 92161	191 bp upstream