rs29741859 SNP Detail

Summary

• ID
  rs29741859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77960230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA GTCCTAAGCT AGCTGTGTCT
  Y
  TTTATGCAAA TTTACATATT TTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46337832	mCV23417732	ABI	CRAMUS_MOUSE	f	SNP	T	T	C			T	C
ss61428317	NES16810795	PERLEGEN	MM_PANEL2	f	SNP			C	C	T		C	C	C		C		T
ss136664019	ENSMUSSNP7015189	ENSEMBL	ENSEMBL_Sanger	f	SNP			C				C
ss323015301	CHEV_9_77900755	CHEVERUD	SCREENING_POP	f	SNP										C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs29741859					SNP	T	T	C	C	T	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428317	NES16810795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77960230 () rs orientation: forward

Symbol	Name	Function Class
Gcm1	glial cells missing homolog 1	within coordinates
Tssr86256	transcription start site region 86256	1000 bp downstream