rs29742017 SNP Detail

Summary

• ID
  rs29742017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66828400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCACTCCT CAGGAGGCTT
  TCAATTAATG GGTGGCAAAA GGAAGGGAGG AAATAGCACT TTGATGTATT CAATTCAAGC
  CTTCATTATT TATTACCCTA GACTAATTCT TTATTGTTCA GTGCTCTTTT ATCTGCAAGT
  GGCAGAAACC CAGCCAGATC AAGCCCCTGT GAGACAAGGG TTTACTATCC AGATCATGAG
  R
  AAGGAGTGGC TAAGGGGGAC CAGGAGCTTT ATCTTGTCAG AAGTCTCTGT CTCATCTCTG
  CTTCTTTTTC AGTTTTAATT TAAAATATGT TAAATACCAA CTGTCCTAAC ATACACACAC
  ACCAACAAAA ATTCTTTTGG ATGCCTCCAT TTTTAAGAGT ATTAAAGGGG CCCTGCCTGA
  CAACAAACTA TCTAAAACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46336148	mCV23180051	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss61411489	NES16800850	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G		G	G	G	G		G	G	G	G		G
ss136576039	ENSMUSSNP7240765	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss322989031	CHEV_9_66768925	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29742017					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61411489	NES16800850	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66828400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21974	CpG island 21974	1175 bp distal
Rab8b	RAB8B, member RAS oncogene family	1431 bp upstream
Rr368814	regulatory region 368814	1532 bp downstream
Rr401489	regulatory region 401489	1144 bp downstream
Rr681814	regulatory region 681814	941 bp distal
Rr681815	regulatory region 681815	1151 bp proximal
Tssr90295	transcription start site region 90295	1921 bp upstream
Tssr90296	transcription start site region 90296	1408 bp upstream