rs29742022 SNP Detail

Summary

• ID
  rs29742022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45863414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CATTGTTGTC CAGATCATAG ACAGGGCACT GTGGAGGAAG GAAGGAAGAG GCAGATGGAT
  GGGGAACTGG GCCCTGTCCC CTCTGCTAAT GTCCCAACTA CTTTCTGATG GAGGATAAAA
  TGACAGACAG CTTACCAGGA CATCTTGGAT GGAGATGACT GAGCAGGGGA AGGCCTTCTT
  GGAGGTCACC TTGACAATTA CCGAGTCCAC ACCATCAGGA AACTCGTATT TGAAGTACTG
  AGAACATAGG AAGGGAGAGT GTCATCTCAG GAGGGTGCTC TCTCTGCCCC TCCGAAGGGA
  Y
  CTGTCTCCTC CAAGGGAGGT TTCAGAATCT TCTTGGCTCA GACAATGAAG CTACGAGGGG
  AGAAGAGCCT TGACCGTGAA CATCCCAGTC CTGCATGTCC CTGAGCACTG ATATCCTGTG
  TGTCAGCTGG GCACATAGGA TTGTGCCTGA GAGGCAGAGT AGGAAAGTCA GTGAGCAGAC
  CCTGTCACTG CACTGTCCCT GCCTGTCTAT CCACACAGGA GCTCCGAGAG TCCCACCCTA
  GAGACAAAAT TAATTGCTAG TCCTAGCAAT TCTGTACCTA CTCCTGCTCT CATATCCAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46336153	mCV25173028	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136420867	ENSMUSSNP1687327	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29742022					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45863414 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	1985 bp upstream
Gm68914	predicted gene, 68914	864 bp downstream
Rr678012	regulatory region 678012	1495 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr89292	transcription start site region 89292	743 bp downstream
Tssr89293	transcription start site region 89293	1557 bp downstream