rs29742136 SNP Detail

Summary

• ID
  rs29742136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112064973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC AGATCAGTGC TGCCTGCCCC
  R
  CTGGGCGCTG ATGCGCTGAC TGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46335274	mCV25391809	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss136974630	ENSMUSSNP5296256	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss323199028	CHEV_9_112138409	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29742136					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112064973 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	within coordinates
Cpgi22409	CpG island 22409	142 bp distal
Gm68368	predicted gene, 68368	388 bp upstream
Rr687421	regulatory region 687421	1572 bp distal
Rr687422	regulatory region 687422	898 bp distal
Rr687423	regulatory region 687423	within coordinates
Tssr87517	transcription start site region 87517	1654 bp downstream
Tssr87518	transcription start site region 87518	1592 bp downstream
Tssr91805	transcription start site region 91805	1286 bp upstream
Tssr91806	transcription start site region 91806	1261 bp upstream
Tssr91807	transcription start site region 91807	1083 bp upstream
Tssr91808	transcription start site region 91808	1047 bp upstream
Tssr91809	transcription start site region 91809	1002 bp upstream
Tssr91810	transcription start site region 91810	938 bp upstream
Tssr91811	transcription start site region 91811	709 bp upstream
Tssr91812	transcription start site region 91812	403 bp upstream
Tssr91813	transcription start site region 91813	369 bp upstream
Tssr91814	transcription start site region 91814	63 bp upstream
Tssr91815	transcription start site region 91815	40 bp upstream
Tssr91816	transcription start site region 91816	11 bp upstream
Tssr91817	transcription start site region 91817	within coordinates
Tssr91818	transcription start site region 91818	14 bp downstream
Tssr91819	transcription start site region 91819	35 bp downstream
Tssr91820	transcription start site region 91820	61 bp downstream