rs29742579 SNP Detail

Summary

• ID
  rs29742579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53524521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCCCTG TGATTTAAAA
  AAAAAAAAGT TATGTATGAG TGTTTTTGCC TGCATGCATA TCTATCCTCC AAATGTATGC
  CTGGTGGGCA CAGAGGAAGA AAAGGGACCC TTGAAACTGG AGTTACATAA AGTTGTGAGC
  CACCAGGTGG ATGCTGAGAC TCAAACCTAT GAAAAGGCAG CAAATGTTCT TAACTGTTCG
  R
  TCACAAGCCC CTCAAAATTT TGTGAAAAAA CAAAAACAAA AATCAAACCT TAAGCCAGGT
  GTTGCAGCAC ACAAATTTTA TCCCAGCCCT CAGGAGGCAG AGTGCACATA GTGGGCTCTA
  GAACAGCCAG GACTATGTAG AAATCTATTT CTCACAAAAA CAAATAGATT AACATCTTAG
  TCTAGCACAC TAGATCTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss46336761	mCV25223539	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss136501974	ENSMUSSNP3693241	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322963211	CHEV_9_53421326	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs29742579					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53524521 () rs orientation: forward

Symbol	Name	Function Class
Cul5	cullin 5	1360 bp downstream
Rr679044	regulatory region 679044	1455 bp distal