rs29742600 SNP Detail

Summary

• ID
  rs29742600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106765065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACA GACTGCTGGC CAGTGTTCTG
  R
  CCACATCCAG GAGATGAGGT GAAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46338491	mCV22322724	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29742600					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106765065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	189 bp distal
Manf	mesencephalic astrocyte-derived neurotrophic factor	887 bp downstream
Rbm15b	RNA binding motif protein 15B	791 bp upstream
Rr401656	regulatory region 401656	388 bp downstream
Rr686406	regulatory region 686406	575 bp distal
Rr686407	regulatory region 686407	within coordinates
Rr686408	regulatory region 686408	149 bp proximal
Tssr86941	transcription start site region 86941	1429 bp downstream
Tssr91351	transcription start site region 91351	772 bp upstream
Tssr91352	transcription start site region 91352	754 bp upstream