rs29743275 SNP Detail

Summary

• ID
  rs29743275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72502944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTAGCCA AAAGGCCAAA
  AGGAGATCTT TCTGAAACAT GTAAAAAGCT CGTCTGAATT CAATAAAAGA ACATTTGTAC
  AATATGTTGA AGAAAGTCTG AGTTCAAGAT CCAGGAAATT GACATTGTCA GCAAACTTCT
  ATGACCAGGA AAAGTGTTTA ACTGTTCTTT TATCATTTGG CACATCTATA AAATGAAATA
  R
  AGTGAAACTG CATAAGGTTT ATTTTAGTCT AAAATTATAA ACTTGTCTGA AGTAGAAAAT
  CTTGAAAAAT TGTCCAGAGA TGTCTTGCTA GTTTCCTAAA AAAAAAAAAA AAAATTTTTT
  TTTTGTTTTT TGTTTTGTTT TTTTGAGGCA GGGTTTCTCT GTATAGCCCT GAGTTAAAAG
  AAATTTTTAA CAAGTGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss46336967	mCV23623907	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G	G
ss50741786	NES14239812	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	A	G			G	G	G	A
ss136622583	ENSMUSSNP2693030	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs29743275					SNP	A	A	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50741786	NES14239812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72502944 () rs orientation: forward

Symbol	Name	Function Class
Gm37105	predicted gene, 37105	within coordinates
Rfx7	regulatory factor X, 7	within coordinates
Rr682776	regulatory region 682776	1152 bp distal
Rr682777	regulatory region 682777	779 bp distal