rs29743300 SNP Detail

Summary

• ID
  rs29743300
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23009391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGATATTAT CTTATTGTTT TCTAATCTAT TCTAACTTTT
  ACAGAGAAAT TTAAAAAAAC AACTTTATAT GCCACTCAGA GTCCAGGCCA AAACTTGCTT
  M
  TGCTGTCTCA ACAATTATAC ATCTACTGTC TATCAGTTTT TCAATTTTTA AAATTAAATT
  TAAAGTTTAT TTTGTATGTC CCTGCATGTG TCCATTTGAG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47375411	NES11350978	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29743300					SNP	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47375411	NES11350978	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23009391 () rs orientation: forward

Symbol	Name	Function Class
Rr285917	regulatory region 285917	1826 bp distal
Vmn1r210	vomeronasal 1 receptor 210	1973 bp downstream