rs29743597 SNP Detail

Summary

• ID
  rs29743597
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48214622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTGTTT TGGAAGCTTA
  GTAATTTTGA CCGTTAAAAC TATGTTTCTA AGCTGGGCAT GGTGGAGCAC ACCTTTAATC
  CCAGCACTCG GGAGGCAGAG GCTGGCGGAT TTCTGAGTTC AAGGCCAGCC TGGTCTACAA
  AGTGAGTTCC AGGACAGCCA GGGCTATACA GAGAAACCCT GTCTCGAAAA ACCAAACCAA
  M
  CAAACAAACA AACAACCAAA ACCCCTATGT TTCTGTATTT GTTTAGTCAG CCAGCTTTCG
  TATCTGGTTC TGCACTTGGC CTGCAAAGTC TCTGGAAAGT CCTTTTCGAA GGGGGAAGGT
  ACTGAGTGGT CTTGAATTCA TTTTGGATAT TACATTCCCC CTTTTTCCTT GGTACATTTC
  TGTTGAAAGC CGGCCTGCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46337352	mCV22888758	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss136451409	ENSMUSSNP350722	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			A
ss322953080	CHEV_9_48111405	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29743597					SNP	A	A	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48214622 () rs orientation: forward

Symbol	Name	Function Class
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Rr195312	regulatory region 195312	379 bp proximal
Rr195313	regulatory region 195313	1779 bp proximal
Rr209369	regulatory region 209369	within coordinates
Rr383325	regulatory region 383325	within coordinates