rs29744598 SNP Detail

Summary

• ID
  rs29744598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23218016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAGAA AGAAAGGAAG
  GAAGGAAGGA AGGAAGGAAG GAAGGAAGGA AGGAAGAAAG AAAGAAAGAA AGAAAGAAAG
  AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AGGTCTTTAT GGTCCCCTAC
  AGAGAGAATA AACTACAGAA GCTGAGCTTT CCCCAACTGC TAGTGCTCAT GTCCCCTCAT
  R
  CATTATAAGC CAAGGACAGA TGCTGTCTCT TTTCCTGCTC AGTGCCCTCC CCTGTTAAAC
  AAGCTTTTAG AAGGAGGCAT TGAAGTACAA GAATAGAAGC AATAGAGAGA GAGAGAGAAA
  TCATTTATGG CAATAAGAAA ATAAATTGCT ATTTTAAAAT ACCCTGAAGT GTTTAGATTA
  ATGAATGATG AGGTAATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47376089	NES11375575	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29744598					SNP	G	G	G	G	G	G	G	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47376089	NES11375575	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23218016 () rs orientation: forward

Symbol	Name	Function Class
Vmn1r214	vomeronasal 1 receptor 214	492 bp upstream