rs29744877 SNP Detail

Summary

• ID
  rs29744877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107429920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGCCTCCAGA TCATCTCATT
  Y
  ACTATACAAG TATGTCACAA ACTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46336582	mCV24366239	ABI	CRAMUS_MOUSE	f	SNP	T	T	T			C	C
ss47777555	NES11986026	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		C	T		C	T	T	C		T
ss136948292	ENSMUSSNP2728881	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss323191587	CHEV_9_107455052	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29744877					SNP	T	T	T	T	T	C	C	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777555	NES11986026	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107429920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22292	CpG island 22292	671 bp distal
Cpgi22293	CpG island 22293	1157 bp proximal
Gm34106	predicted gene, 34106	1884 bp upstream
Gm68605	predicted gene, 68605	789 bp downstream
Rassf1	Ras association (RalGDS/AF-6) domain family member 1	within coordinates
Rr368855	regulatory region 368855	1468 bp downstream
Rr401662	regulatory region 401662	1849 bp upstream
Tssr86984	transcription start site region 86984	1923 bp downstream
Tssr86985	transcription start site region 86985	1281 bp downstream
Tssr86986	transcription start site region 86986	1146 bp downstream
Tssr86987	transcription start site region 86987	1856 bp upstream
Tssr86988	transcription start site region 86988	1885 bp upstream
Tssr86989	transcription start site region 86989	1912 bp upstream
Tssr86990	transcription start site region 86990	1950 bp upstream
Tssr86991	transcription start site region 86991	1964 bp upstream
Tssr91394	transcription start site region 91394	1884 bp upstream
Tssr91395	transcription start site region 91395	1672 bp downstream
Zmynd10	zinc finger, MYND domain containing 10	1402 bp downstream