rs29745116 SNP Detail

Summary

• ID
  rs29745116
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20811579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC CATCCCAGGG ACAGCTTATA
  M
  AGACAAATAC CATAAAAATT TATAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46338708	mCV27566184	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss136224759	ENSMUSSNP6774807	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
ss322873600	CHEV_9_20704727	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29745116					SNP	A	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20811579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21406	CpG island 21406	1506 bp distal
Eif3g	eukaryotic translation initiation factor 3, subunit G	1693 bp upstream
Rr401258	regulatory region 401258	1242 bp upstream
Rr674623	regulatory region 674623	1170 bp distal
Rr674624	regulatory region 674624	1587 bp distal
Rr674625	regulatory region 674625	144 bp distal
Rr674626	regulatory region 674626	1240 bp proximal
Rr674627	regulatory region 674627	1373 bp proximal
Rr674628	regulatory region 674628	1750 bp proximal
Tssr2789	transcription start site region 2789	1708 bp upstream
Tssr2790	transcription start site region 2790	1697 bp upstream
Tssr88340	transcription start site region 88340	1652 bp upstream