rs29745416 SNP Detail

Summary

• ID
  rs29745416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:80013460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAGCCTT TCTGAGCTTC
  CAGGGAGTTC ATCTGGCTGA TGCCCAGAGC TGCCTTCACG CCCACCTGCA TCAAGCCTGA
  ACTCTATTCG ATGAATTGGG TTTACTCTCT CCCACTTCCT GTCCCCAAAC AAAAAACTTG
  ATCCCATGGA GGTTTTAGGC TTTTTCCCAC CAAGAAATTA TTTCTCTTAC TTGTCCTTAA
  Y
  GGATATGACC ATTTTCCAAG AACCTTTTAT CATTTCTCTG AAAAATGAGT GTCTATTCTT
  CAAGCCCAAC TCACAGCCAT CCCTTTGGCT GCTGAACTGA TGTTCCCAGC CAAAGTATCA
  GTGGCATGAA GCGCTGCCTT GGCTTTCCTG CTTGTTTTCC TGCTTTTCTA ATAACAGGAG
  TGGTTGTCTG GAAGAAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48381230	NES12267662	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29745416					SNP	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48381230	NES12267662	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80013460 () rs orientation: forward

Symbol	Name	Function Class
Cyp1b1	cytochrome P450, family 1, subfamily b, polypeptide 1	909 bp downstream
Tssr149448	transcription start site region 149448	1468 bp downstream
Tssr149449	transcription start site region 149449	1614 bp downstream