rs29745558 SNP Detail

Summary

• ID
  rs29745558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65368320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGGGAGGCG CGCCCGGGGA GCTCGCAGTA CCAAAGCTGG
  GAGGCGGTGG CCTCTGGCTG CTCGGCCGCG CGCCCCCTCT GCCCGCTGCT CCCGCGGGGC
  Y
  CCTGATCTGC GGCCGCCGGT CCAGTCCGCG CCCCGCCGAC TCCATCCTCT GCGCCCAAAT
  CGGGGCGAAG ATCCGTCTAG GCTGGAAAGA AAGGGACGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46338622	mCV24186796	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss136567855	ENSMUSSNP2462338	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss322986734	CHEV_9_65308845	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29745558					SNP	C	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65368320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21949	CpG island 21949	within coordinates
Gm47270	predicted gene, 47270	639 bp downstream
Rr401463	regulatory region 401463	within coordinates
Rr681488	regulatory region 681488	75 bp distal
Rr681489	regulatory region 681489	within coordinates
Rr681490	regulatory region 681490	1217 bp proximal
Spg21	SPG21, maspardin	within coordinates
Tssr2916	transcription start site region 2916	121 bp downstream
Tssr85703	transcription start site region 85703	55 bp downstream
Tssr85704	transcription start site region 85704	45 bp downstream
Tssr85705	transcription start site region 85705	283 bp upstream
Tssr85706	transcription start site region 85706	1500 bp upstream
Tssr85707	transcription start site region 85707	1627 bp upstream
Tssr85708	transcription start site region 85708	1757 bp upstream