rs29746406 SNP Detail

Summary

• ID
  rs29746406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109483678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGTAAA AACAAGGCAG
  TGAAGCAAGA AATAATTACC AAATGCTTAT AAAATTAGGT TTGCCTCCCC AACATCCCTG
  GGTAGAACAA AAGAGTCAGA CTCCAGAGAC CAACTCCTGG GCCTGTGACT TCCAGGCATG
  GCTGCTATGT ATGTCCTTCC TTTCCCAACT TCTACCTAAA TACCATGTCT TTCCAGCCAC
  R
  AGAGAAAAGC GGTGAGAGAG GGTCATTGAA TTCTGCATTT CAGAAATATT TTAACATATT
  TTGTAATTTT TACAGTTAAA AAAAGTGTTT GTCAGTTGCT TTTAACGTAT AATTAATCAC
  AGTTTCTCCA AATGTACTTT ATGGAGGTGG GATTTCCCTT TGTGTGTAGA ATTAATTTAA
  TGTACAGTCT ATTTTACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46878936	NES10702962	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G		G	G	G	G		G
ss320869999	CHEV_3_109379280	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29746406					SNP	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878936	NES10702962	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109483678 () rs orientation: forward

Symbol	Name	Function Class
Rr583433	regulatory region 583433	1903 bp distal
Rr583434	regulatory region 583434	1840 bp proximal
Vav3	vav 3 oncogene	Intron