rs29746420 SNP Detail

Summary

• ID
  rs29746420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56324726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAG GGGCTCCCTG GCCAGAGCGT
  R
  AAGTGAGCAG GCACAGAGCC ACCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46338733	mCV25229849	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss322970682	CHEV_9_56265249	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29746420					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56324726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21795	CpG island 21795	within coordinates
Gm36940	predicted gene, 36940	1376 bp upstream
Hmg20a	high mobility group 20A	1167 bp upstream
Peak1	pseudopodium-enriched atypical kinase 1	within coordinates
Rr206471	regulatory region 206471	within coordinates
Rr368756	regulatory region 368756	1088 bp upstream
Rr368757	regulatory region 368757	1394 bp upstream
Rr401386	regulatory region 401386	569 bp upstream
Tssr85252	transcription start site region 85252	945 bp upstream
Tssr85253	transcription start site region 85253	973 bp upstream
Tssr85254	transcription start site region 85254	1182 bp upstream
Tssr85255	transcription start site region 85255	1255 bp upstream
Tssr85256	transcription start site region 85256	1363 bp upstream
Tssr85257	transcription start site region 85257	1425 bp upstream
Tssr89707	transcription start site region 89707	581 bp downstream
Tssr89708	transcription start site region 89708	619 bp downstream
Tssr89709	transcription start site region 89709	657 bp downstream
Tssr89710	transcription start site region 89710	1393 bp downstream
Tssr89711	transcription start site region 89711	1486 bp downstream