rs29746627 SNP Detail

Summary

• ID
  rs29746627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109481006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT GCTGTGCTGT GTTAGGATTG
  Y
  GTTTGCAGGA GCTAGTCTGC ACAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46878837	NES10702911	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C		C	C	C	C
ss320869971	CHEV_3_109376608	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29746627					SNP	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878837	NES10702911	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109481006 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	220 bp distal
Rr583432	regulatory region 583432	within coordinates
Rr583433	regulatory region 583433	228 bp proximal
Tssr31300	transcription start site region 31300	279 bp upstream
Tssr31301	transcription start site region 31301	311 bp upstream
Tssr31302	transcription start site region 31302	329 bp upstream
Vav3	vav 3 oncogene	Intron