rs29746969 SNP Detail

Summary

• ID
  rs29746969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84852117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATGTGTTT ATCATCTAGA TTTGATGCTT ATCAGCTCAG
  GACCAGTCAG GCTATCTGTA CACAGATCTG TCCTTCCCAG AGTTATAAGG TTTTACCCAT
  Y
  TACCCAATTT ATAATGAATT TATAGTATTT AACTGTGTTA CTATTTATAT AGATTTAGAG
  AAAATCCCTT GTTTTTAGGC AGATATCTTT TCTCTTTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39503048	mCV24484378	ABI	CRAMUS_MOUSE	f	SNP		T						C
ss48382095	NES12273439	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29746969					SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48382095	NES12273439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84852117 () rs orientation: forward

Symbol	Name	Function Class
4930500A05Rik	RIKEN cDNA 4930500A05 gene	within coordinates
Cpgi9569	CpG island 9569	1834 bp proximal
Gm64006	predicted gene, 64006	1391 bp downstream
Plekhh2	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	within coordinates
Rr532103	regulatory region 532103	1979 bp proximal
Tssr149687	transcription start site region 149687	1428 bp upstream
Tssr149688	transcription start site region 149688	1417 bp upstream