rs29746973 SNP Detail

Summary

• ID
  rs29746973
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84851669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAATGGA GGAGTGGATG TAGAGGGCAT TCTACTCTTT
  TGAAATGGAA CTAACTCTCC CATTACTCAT CATTTAAGAT ACAAACTACG TGACTCACAA
  W
  TCTATTATAT AATCATAAGA CAACCAGACA GCACCTTGGT ATGTATGTAT ATCTCATCCC
  ATAAAAACAC TACACAATCT TTCTTATATA AATAAAATT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39557169	mCV24484111	ABI	CRAMUS_MOUSE	f	SNP		T					T	A
ss48382099	NES12273470	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		A	T	T	A	T	T	T
ss146139119	ENSMUSSNP4028979	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29746973					SNP	T	T	T	T	T	T	T	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48382099	NES12273470	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84851669 () rs orientation: forward

Symbol	Name	Function Class
4930500A05Rik	RIKEN cDNA 4930500A05 gene	within coordinates
Gm64006	predicted gene, 64006	1839 bp downstream
Plekhh2	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	within coordinates
Tssr149687	transcription start site region 149687	980 bp upstream
Tssr149688	transcription start site region 149688	969 bp upstream