rs29746996 SNP Detail

Summary

• ID
  rs29746996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50912714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAGTTTG TGACCTAGGC
  AGCATCCCTC ACCTTCTGTC CCTGGCCCAC CACCTCAGCC TCCTAACTCT AAATAGCCCA
  CCAGTCAATT AGCATCTCCT GCCTCCACGC AACCTGCCAT CTCATGACCA GAGAGAGCCA
  GGCTGTGCTT GCCGCATCAT CTGTGGGTAC AGCAGGGCTT AGAGTAACTC TCCACAGTTC
  Y
  ACCAAGCCCT CTCAGATGAC ATTAGCTTCG TGATTATTCA AGTTCGCACC TTTTTGTAGC
  TATGGCTTTC AGGGGGGTCA CATAACCACT TGTCTCGGTA CCCCTTCACC AGCACGACAC
  ACATAAAACC ATGCAGCAAA CAGATGAGAC AGAAACACTT CTCTGTTTGT AAGAGATTAG
  CAGAAAGCCT TTGTCCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47876638	NES11679990	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29746996					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47876638	NES11679990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50912714 () rs orientation: forward

Symbol	Name	Function Class
Gm31686	predicted gene, 31686	within coordinates
Gm67430	predicted gene, 67430	388 bp downstream
Rr543	regulatory region 543	within coordinates
Rr399654	regulatory region 399654	1399 bp upstream
Rr630096	regulatory region 630096	1882 bp distal
Rr630097	regulatory region 630097	1357 bp distal
Rr630098	regulatory region 630098	1096 bp distal
Rr630099	regulatory region 630099	1354 bp proximal
Rr630100	regulatory region 630100	1526 bp proximal
Rr630101	regulatory region 630101	1571 bp proximal