rs29746998 SNP Detail

Summary

• ID
  rs29746998
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50912854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACA CACATAAAAC CATGCAGCAA
  R
  CAGATGAGAC AGAAACACTT CTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45880423	mCV23306513	ABI	CRAMUS_MOUSE	f	SNP	A	A	G			A		G
ss47876640	NES11679991	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G		A	G	G	G			G	G		G
ss133185758	ENSMUSSNP5586319	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G				A
ss321798416	CHEV_6_50885873	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29746998					SNP	A	A	G	A	G	A	A	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47876640	NES11679991	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50912854 () rs orientation: forward

Symbol	Name	Function Class
Gm31686	predicted gene, 31686	within coordinates
Gm67430	predicted gene, 67430	528 bp downstream
Rr543	regulatory region 543	within coordinates
Rr399654	regulatory region 399654	1259 bp upstream
Rr630097	regulatory region 630097	1497 bp distal
Rr630098	regulatory region 630098	1236 bp distal
Rr630099	regulatory region 630099	1214 bp proximal
Rr630100	regulatory region 630100	1386 bp proximal
Rr630101	regulatory region 630101	1431 bp proximal