rs29747653 SNP Detail

Summary

• ID
  rs29747653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23493311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAATATGT GTGGCCCGTA CGGGGATCGA ACCCGCGACC
  TTGGCGTTAT TAGCACCACG CTCTAACCAA CTGAGCTAAC CGGCCAGACA TGAGAGTTGC
  Y
  TCTACGACCT CTACAGATAT TTGATGACAA CGTTGACAAC TAAGAGTTTC GTCTTGTTTT
  TCGAAATTTT AAGATTTTTT TTAAAGATGT AAAAACTTAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47378143	NES11369056	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29747653					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47378143	NES11369056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23493311 () rs orientation: forward

Symbol	Name	Function Class
4930557F10Rik	RIKEN cDNA 4930557F10 gene	within coordinates
4930597G05Rik	RIKEN cDNA 4930597G05 gene	290 bp downstream
Cpgi5346	CpG island 5346	348 bp proximal
n-TIaat9	nuclear encoded tRNA isoleucine 9 (anticodon AAT)	16 bp upstream
n-TVcac11	nuclear encoded tRNA valine 11 (anticodon CAC)	1440 bp downstream
Rr475820	regulatory region 475820	1216 bp distal
Rr475821	regulatory region 475821	within coordinates
Tssr121691	transcription start site region 121691	1012 bp downstream