rs29747812 SNP Detail

Summary

• ID
  rs29747812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:84850646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATCAGTG GTATTGTTCT TTTACAAACA GTTCTTGACT
  GTATTGTTTT TACCTTTTCT CTCCGCACTG TAATCTTTAT CAGATCTCCC TCTTTTGTTG
  R
  CCTTTGCCAC GGAGTTGACT TGGCCCTTCT TCCTGGTTAA TTTAGTTTGC GAAGACTCTT
  GGCTGTAAGT AGTTATCTCT CGGTGTGACC TCATAGTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48382108	NES12263512	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A	A	G	A	A	G	G
ss146139087	ENSMUSSNP3364712	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29747812					SNP	A	A	A	A	A	A	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48382108	NES12263512	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84850646 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930500A05Rik	RIKEN cDNA 4930500A05 gene			within coordinates
Plekhh2	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2			Intron
				Noncoding-Transcript-Variant
Tssr149687	transcription start site region 149687			29 bp downstream
Tssr149688	transcription start site region 149688			44 bp downstream