rs29748180 SNP Detail

Summary

• ID
  rs29748180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50406070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCCGCTC CTTGCTTCCA
  CACCTGGGAC TGTTCCTGTG CCTGGCTCTG CACTTATCCC CCTCCCTCTC TGCCAGTGAT
  AATGGGTCCT GCGTGGTCCT TGATAACATC TACACCTCCG ACATCTTGGA AATCAGCACT
  ATGGCTAACG TCTCTGGTGG GGATGTAACC TATACAGGTA TGTCAAAGGC GCTCATTCTG
  Y
  TGCCCCTTTG TTCTCGGTGG AGCTTGAATC AGACTTTCCT ACGGTCCGTA TGTGTGTGTG
  GACAGGATGG AAAGTGGGGA GTGGTGACTG ATAGGTGGCA GCGTGGACCC GGAGGACTTT
  TTCTCTAGTT TCCTGTCCGT AACTGAATCG CAGGTGGGGT AAACTGAGCC CCAGGCAGAT
  CACACCCTGG CAACATAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46338365	mCV24342307	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss47706254	NES11306372	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	C	T	T	T	T
ss136476424	ENSMUSSNP2806456	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29748180					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706254	NES11306372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50406070 () rs orientation: forward

Symbol	Name	Function Class
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Tssr2866	transcription start site region 2866	713 bp downstream
Tssr85023	transcription start site region 85023	624 bp downstream
Tssr85024	transcription start site region 85024	498 bp downstream
Tssr85025	transcription start site region 85025	237 bp downstream