rs29748418 SNP Detail

Summary

• ID
  rs29748418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84849496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTTTCT GAGAGGGAAC
  ATGAAGTTGG GAGGGTAGGG AGGTGGAGAG GAGTTGTGAG GAGTTGGGAG GGGTTGGGAG
  GGATTGGAAG AAGGGAAAGA TCACGATGAG AATGAATTGT ATGAGATAAT TTTTAAATAA
  AAACATTCAA AAGGGAGGAG AAAAACAGCA CCTGCAACTC TTTAATACAT TGATCTGAGG
  R
  CCTATGTGTG TGTATATACT TTGTGGAATG GAGAGTTGTG AAAGCTCTGT GATTTTTCAT
  GATTATAGTT GAAGCTGAGC CACTAGCTTC TGTATACAAC ACATATGGAC TGGGAGCTAA
  GAGGAAACAG CACTCCAATG GCTGGTCTTG GACAGTGCAC TGGGAAGCAT TGCCAGCTTG
  AAGGCTGTTT ACTTTTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48382114	NES12263537	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29748418					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48382114	NES12263537	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84849496 () rs orientation: forward

Symbol	Name	Function Class
4930500A05Rik	RIKEN cDNA 4930500A05 gene	484 bp downstream
Plekhh2	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	within coordinates
Tssr149687	transcription start site region 149687	1179 bp downstream
Tssr149688	transcription start site region 149688	1194 bp downstream