rs29748419 SNP Detail

Summary

• ID
  rs29748419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84849399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGTCACT ATTTTATTAA
  GGATTTCTGA CATTGCACTC ATGAGGATAT TAGTCTGAGC TTTGACTTTG ATTGTGGTTG
  TTTGGTTACG TTTGCTTTTG GTTTTCTGAG AGGGAACATG AAGTTGGGAG GGTAGGGAGG
  TGGAGAGGAG TTGTGAGGAG TTGGGAGGGG TTGGGAGGGA TTGGAAGAAG GGAAAGATCA
  Y
  GATGAGAATG AATTGTATGA GATAATTTTT AAATAAAAAC ATTCAAAAGG GAGGAGAAAA
  ACAGCACCTG CAACTCTTTA ATACATTGAT CTGAGGACCT ATGTGTGTGT ATATACTTTG
  TGGAATGGAG AGTTGTGAAA GCTCTGTGAT TTTTCATGAT TATAGTTGAA GCTGAGCCAC
  TAGCTTCTGT ATACAACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48382115	NES12263536	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29748419					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48382115	NES12263536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84849399 () rs orientation: forward

Symbol	Name	Function Class
4930500A05Rik	RIKEN cDNA 4930500A05 gene	581 bp downstream
Plekhh2	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	within coordinates
Tssr149687	transcription start site region 149687	1276 bp downstream
Tssr149688	transcription start site region 149688	1291 bp downstream