rs29748735 SNP Detail

Summary

• ID
  rs29748735
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40345372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGGGCA TCAGATCACG
  TTACGAATGG TTGTGAGCCA CCATGTGGTT GCTGGGATTT GAACTCAAGT CCTTCTGAAG
  AGCAGTCAGT GCTCTTAACC ACTGAGCCAT CTCTCTAGAG TATAAGATTA AGTACTGCTC
  ATAAAACCCA TTTGGGTAAA GAAAATGGGA GCATTCCTCA ACACCTAACA GCTACAAGTA
  M
  AAAAACCTCA CAAATACCAT CTTGTAAAAG GTGGCAAAGA CATTTCCAGA GATACATAAA
  ACCCCAAATC CACCCCAAAC TCACGAACAC GTGGTCTGCA CGTGCTTTTA GAGAATGTAG
  TTAATCCTTA CCTTGAATAT CCGTTATAAC TTCTCATTCT CCTAAATGTC CCATTTCGTC
  TTCTCCTGGG TACCAAGAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46338270	mCV23426775	ABI	CRAMUS_MOUSE	f	SNP		A						C
ss50677673	NES14011104	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	C	C	C		C	A	C	C		C
ss136329982	ENSMUSSNP1679240	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C
ss322916122	CHEV_9_40241661	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29748735					SNP	A	A	C	A	A	A	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677673	NES14011104	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40345372 () rs orientation: forward

Symbol	Name	Function Class
Gm51668	predicted gene, 51668	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676831	regulatory region 676831	323 bp distal
Tssr88924	transcription start site region 88924	953 bp downstream
Tssr88925	transcription start site region 88925	1025 bp downstream
Tssr88926	transcription start site region 88926	1069 bp downstream
Tssr88927	transcription start site region 88927	1080 bp downstream
Tssr88928	transcription start site region 88928	1157 bp downstream