rs29749514 SNP Detail

Summary

• ID
  rs29749514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23493726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTGCTA GCAGTCCTCT
  GGCCGCGACG GAGTTCTGCC ACCCACTTCT CCCTCTTACC CACAAGTGAC TATTTGAAGT
  CTTGCCAATT TTAATCAATT TCAGAATACA TTCGCCAAAA CCATTTAGAT AACGCGGAGG
  GTGGCAGGCC GCCTCCAGAT CAAGTCTCTC TACTGGACTG CTAGGTAGTG GCGGGGATTC
  Y
  AGACTAGTGG CTCAGGAGAG GCAGGGTATT TGTTCCCAGA AGATCTGCGT TGCTCCGGGC
  CAGGGGGAGG TGGTCTCTCC GAACACTATC GCGGTCCGTG GAGTCACTGC GTGTTGAAAA
  GAGTGGAGGA CCAGCGCGCC CTAGTACGTC TCAAGGACGA GTCCTCTCGG CTCATCCACG
  CCTGTCCTGG GTCTCAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47378155	NES11369060	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C		C		T
ss324288361	CHEV_13_23401425	CHEVERUD	SCREENING_POP	f	SNP											T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs29749514					SNP	T	T	T	T	C	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47378155	NES11369060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23493726 () rs orientation: forward

Symbol	Name	Function Class
4930557F10Rik	RIKEN cDNA 4930557F10 gene	within coordinates
4930597G05Rik	RIKEN cDNA 4930597G05 gene	within coordinates
Cpgi5346	CpG island 5346	within coordinates
n-TIaat9	nuclear encoded tRNA isoleucine 9 (anticodon AAT)	431 bp upstream
n-TVcac11	nuclear encoded tRNA valine 11 (anticodon CAC)	1855 bp downstream
Rr475820	regulatory region 475820	1631 bp distal
Rr475821	regulatory region 475821	within coordinates
Tssr121691	transcription start site region 121691	597 bp downstream