rs29749520 SNP Detail

Summary

• ID
  rs29749520
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23494046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAACTGTAG CTGTTCCAGA AGTTTTGGGG ATCCCGGGGC
  TTCGTGGCGT TTTTTATCTG CCTCAGTGGA AACCGGAAGA GGCGACAGGG ATGCCCTTCG
  W
  GTCATTCGGT CTTTCTTTAG TGAAGTCGCG AAGGAGTTGG GAACTTGGGA TTCTGAAGTG
  AATATTTTCG GGTCGCCCAA TCTTGGTGAC AACGAATATC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47378161	NES11369062	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29749520					SNP	A	A	A	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47378161	NES11369062	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23494046 () rs orientation: forward

Symbol	Name	Function Class
4930557F10Rik	RIKEN cDNA 4930557F10 gene	within coordinates
4930597G05Rik	RIKEN cDNA 4930597G05 gene	within coordinates
Cpgi5346	CpG island 5346	within coordinates
n-TIaat9	nuclear encoded tRNA isoleucine 9 (anticodon AAT)	751 bp upstream
Rr475820	regulatory region 475820	1951 bp distal
Rr475821	regulatory region 475821	within coordinates
Tssr121691	transcription start site region 121691	277 bp downstream