rs29750084 SNP Detail

Summary

• ID
  rs29750084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79923331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTATAC AAACATGGAA
  ACTAGACTAA CAGCACTACT ACTAACATTT GCAAATAAGT TGAATACTAA AAGGCTCCAA
  ATTTAAATTA TAGATGAGGA AATGCATGAA AGTCTGATGG AGTGTTAGAA TTCAATGGTA
  AAGTACTTGC ATCGCTGAAT ACATGATAGC CCCAAGAACT CCGTCCGAAT GTTGCCTTCC
  R
  AAGCTTGAAA CTTAAAGCTG ATTTGTAAGG CATGTTGCTT GACCCTCTTG GTCGTTTTCG
  TTCCTCTTGT TTATGGGTTC GAGCTCTTTA TGCCTTCCCC TTATCCCAAG GACCAGCTGA
  TGAATTCGTA TGAATGTTTC TTAGGAGCTC GTTCTAAACA TTCAAGTTAC TTTAAGAACA
  TTAATGTCTA GAGGTAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48381430	NES12269928	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29750084					SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48381430	NES12269928	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79923331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9519	CpG island 9519	215 bp distal
Gm56916	predicted gene, 56916	within coordinates
Rmdn2	regulator of microtubule dynamics 2	within coordinates
Rr392984	regulatory region 392984	within coordinates
Rr531314	regulatory region 531314	384 bp distal
Rr531315	regulatory region 531315	157 bp distal
Tssr145919	transcription start site region 145919	859 bp downstream
Tssr145920	transcription start site region 145920	831 bp downstream
Tssr145921	transcription start site region 145921	699 bp downstream
Tssr145922	transcription start site region 145922	671 bp downstream
Tssr145923	transcription start site region 145923	650 bp downstream
Tssr145924	transcription start site region 145924	606 bp downstream
Tssr145925	transcription start site region 145925	360 bp downstream
Tssr145926	transcription start site region 145926	960 bp upstream
Tssr149447	transcription start site region 149447	415 bp upstream