rs29750085 SNP Detail

Summary

• ID
  rs29750085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79922358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTGAACT GAAAGCAACT CAAAACAGCA GGGGACAAAG
  AGGCTGGGAA TTTGGTTCAT AGAACATCAA AGTGAGTTGA AGTCAGGAAA ACCAGATGAT
  R
  GTGCAAGAAG TCTGCGTTTG ACTGAAGGAA GGTTAAAAGT TGTGCCGTGG GGGTGGAGGT
  GAGCTAAGGG CGGGGAGGCC TTGGAAGCCA TCGGTGGCAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48381431	NES12269926	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29750085					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48381431	NES12269926	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79922358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9519	CpG island 9519	within coordinates
Gm56916	predicted gene, 56916	579 bp upstream
Rmdn2	regulator of microtubule dynamics 2	within coordinates
Rr392984	regulatory region 392984	within coordinates
Rr531314	regulatory region 531314	within coordinates
Rr531315	regulatory region 531315	590 bp proximal
Tssr145919	transcription start site region 145919	104 bp upstream
Tssr145920	transcription start site region 145920	129 bp upstream
Tssr145921	transcription start site region 145921	263 bp upstream
Tssr145922	transcription start site region 145922	279 bp upstream
Tssr145923	transcription start site region 145923	307 bp upstream
Tssr145924	transcription start site region 145924	326 bp upstream
Tssr145925	transcription start site region 145925	587 bp upstream
Tssr145926	transcription start site region 145926	1933 bp upstream
Tssr149447	transcription start site region 149447	517 bp downstream