rs29750086 SNP Detail

Summary

• ID
  rs29750086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:79920691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGACCCAA CCCCCTCTTC
  TAGCCTGTGT AGACAAGGCA CACACACTGT ACACAAACAC GCACGCAGGC AAAACATCCA
  TAAACATAAA ATAAAAATCA ATAAATCTTT AAAAGAATGA AGCCAGAGAA CTGGGAATAA
  GACTCATCAG ACCCTTTCCC TTTCTGCGGA ACATTTCCTT CAAGCTCTCT GAGAAATGCG
  R
  GTGAGTTTGC TGTTTGGAAA CAGGAGTTGG AGACTTCATA ACTGAACTGA AGGACTGACA
  GTTCAGCACT GTTCACAATG AAGTTGAGAC TAAAAAACTT TATAGGTGAA TGGGAAAAAA
  TCATGGAATG TGGGTTCTAA TAGTTGACTG CTATCAATCC TTGAGTTTTA CAATAAAATT
  CCTATCAAAT TCTTGACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48381432	NES12270005	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29750086					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48381432	NES12270005	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79920691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9519	CpG island 9519	1553 bp proximal
Rmdn2	regulator of microtubule dynamics 2	Intron
Rr392984	regulatory region 392984	1423 bp upstream
Rr531314	regulatory region 531314	1278 bp proximal
Tssr145917	transcription start site region 145917	1474 bp downstream
Tssr145918	transcription start site region 145918	1404 bp downstream
Tssr145919	transcription start site region 145919	1771 bp upstream
Tssr145920	transcription start site region 145920	1796 bp upstream
Tssr145921	transcription start site region 145921	1930 bp upstream
Tssr145922	transcription start site region 145922	1946 bp upstream
Tssr145923	transcription start site region 145923	1974 bp upstream
Tssr145924	transcription start site region 145924	1993 bp upstream