rs29750087 SNP Detail

Summary

• ID
  rs29750087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79920648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCACCT GGTTGCTCAC
  AACCACCTGT ATATCCAGCT CCAGGTGACC CAACCCCCTC TTCTAGCCTG TGTAGACAAG
  GCACACACAC TGTACACAAA CACGCACGCA GGCAAAACAT CCATAAACAT AAAATAAAAA
  TCAATAAATC TTTAAAAGAA TGAAGCCAGA GAACTGGGAA TAAGACTCAT CAGACCCTTT
  Y
  CCTTTCTGCG GAACATTTCC TTCAAGCTCT CTGAGAAATG CGGGTGAGTT TGCTGTTTGG
  AAACAGGAGT TGGAGACTTC ATAACTGAAC TGAAGGACTG ACAGTTCAGC ACTGTTCACA
  ATGAAGTTGA GACTAAAAAA CTTTATAGGT GAATGGGAAA AAATCATGGA ATGTGGGTTC
  TAATAGTTGA CTGCTATCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48381433	NES12270004	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29750087					SNP	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48381433	NES12270004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79920648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9519	CpG island 9519	1596 bp proximal
Rmdn2	regulator of microtubule dynamics 2	within coordinates
Rr392984	regulatory region 392984	1466 bp upstream
Rr531314	regulatory region 531314	1321 bp proximal
Tssr145917	transcription start site region 145917	1431 bp downstream
Tssr145918	transcription start site region 145918	1361 bp downstream
Tssr145919	transcription start site region 145919	1814 bp upstream
Tssr145920	transcription start site region 145920	1839 bp upstream
Tssr145921	transcription start site region 145921	1973 bp upstream
Tssr145922	transcription start site region 145922	1989 bp upstream