rs29750807 SNP Detail

Summary

• ID
  rs29750807
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84497575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATGCCTG CCAATGTGAG ATGGTTTTAT TGTCATGTAA
  CTGCTTTTAT TTCATTTTAG ATGGAAGGGG AGAGGGAAGG TTGGGTCCTG TTCAGAATTA
  W
  TCTCCCAAGG TTGTCACCAC CAGCCCCTCT CACCAACTAG ATCTTAAAGT AGTGTAATGC
  TGGGTATAGT GGTGTATGCC TGGAATCCTG GCACTCAGGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48383583	NES12275756	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29750807					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48383583	NES12275756	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84497575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9566	CpG island 9566	1125 bp distal
Gm36279	predicted gene, 36279	within coordinates
Gm56881	predicted gene, 56881	733 bp downstream
Rr333589	regulatory region 333589	175 bp distal
Rr333590	regulatory region 333590	626 bp proximal
Rr340271	regulatory region 340271	774 bp distal
Rr405496	regulatory region 405496	1973 bp downstream
Thada	thyroid adenoma associated	within coordinates
Tssr146046	transcription start site region 146046	1521 bp downstream