rs29750809 SNP Detail

Summary

• ID
  rs29750809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84497441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCATCCCT CCTGTCCTCC CAGATTGGCC ACAGCCAGCC
  AAGATCCAAG TCTGGGGTAA GTCCCAGCTA ATGGCAGACT TGGTAGGATG GACTTGGAGA
  Y
  AACATAAGCC TGCTCTGAAA CATGCTTTGG GACAGCATGC CTGCCAATGT GAGATGGTTT
  TATTGTCATG TAACTGCTTT TATTTCATTT TAGATGGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48383585	NES12275751	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	C	T	T	T	T
ss146132107	ENSMUSSNP5299072	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29750809					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48383585	NES12275751	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84497441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9566	CpG island 9566	991 bp distal
Gm36279	predicted gene, 36279	within coordinates
Gm56881	predicted gene, 56881	599 bp downstream
Rr333589	regulatory region 333589	41 bp distal
Rr333590	regulatory region 333590	760 bp proximal
Rr340271	regulatory region 340271	640 bp distal
Rr405496	regulatory region 405496	1839 bp downstream
Thada	thyroid adenoma associated	63 bp downstream
Tssr146046	transcription start site region 146046	1387 bp downstream