rs29750811 SNP Detail

Summary

• ID
  rs29750811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84497029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCCAGGT GCATTTGGCC
  ACACTGCAGT GCATGCTGCC CCTGTAGGTA GAGCCAATGG CTGCCAGAAG ACTGTAGTGT
  CTTGGACGTA GTGCTGAGTG GGTTGGGTAC GGTGGTTCAT GCCTATAGTC CTAGCACTAA
  TCACAAACTG TGGTGAGTTT TAGGCTAGCC TTGCACAGCT TAGTGTGAGA GTGAGACCAT
  R
  CCCCTATAAA GGAACAAAGC CCTCACCATC TTATATATTA AAGCAAACTG GCTTTTGGCT
  GTGGTCTGAG CAAGGGGCCA CCCAGATCTT AGGACCCTCA AGTGTAGTGA CTTAGGGAAG
  ATGGCTGCTT CACTCTTCCC ACCCACGTTG CTCTTGCCCC TATTACTGCT GGGTTCTGTG
  GCTGAAAGGA CCCCAAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48383587	NES12275746	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29750811					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48383587	NES12275746	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84497029 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9566	CpG island 9566	579 bp distal
Gm36279	predicted gene, 36279	279 bp upstream
Gm56881	predicted gene, 56881	187 bp downstream
Rr333589	regulatory region 333589	within coordinates
Rr333590	regulatory region 333590	1172 bp proximal
Rr340271	regulatory region 340271	228 bp distal
Rr405496	regulatory region 405496	1427 bp downstream
Thada	thyroid adenoma associated	475 bp downstream
Tssr146046	transcription start site region 146046	975 bp downstream
Tssr149670	transcription start site region 149670	1844 bp upstream
Tssr149671	transcription start site region 149671	1702 bp upstream
Tssr149672	transcription start site region 149672	1647 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	1654 bp upstream