rs29750812 SNP Detail

Summary

• ID
  rs29750812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84496915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCAAAGGC TCCTGAGTCC AGGTGCATTT GGCCACACTG
  CAGTGCATGC TGCCCCTGTA GGTAGAGCCA ATGGCTGCCA GAAGACTGTA GTGTCTTGGA
  Y
  GTAGTGCTGA GTGGGTTGGG TACGGTGGTT CATGCCTATA GTCCTAGCAC TAATCACAAA
  CTGTGGTGAG TTTTAGGCTA GCCTTGCACA GCTTAGTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39503064	mCV23110589	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C	T
ss48383588	NES12275866	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	C	T	C	C	T	T
ss146132082	ENSMUSSNP1318300	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29750812					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48383588	NES12275866	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84496915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9566	CpG island 9566	465 bp distal
Gm36279	predicted gene, 36279	393 bp upstream
Gm56881	predicted gene, 56881	73 bp downstream
Rr333589	regulatory region 333589	within coordinates
Rr333590	regulatory region 333590	1286 bp proximal
Rr340271	regulatory region 340271	114 bp distal
Rr405496	regulatory region 405496	1313 bp downstream
Thada	thyroid adenoma associated	589 bp downstream
Tssr146046	transcription start site region 146046	861 bp downstream
Tssr149670	transcription start site region 149670	1730 bp upstream
Tssr149671	transcription start site region 149671	1588 bp upstream
Tssr149672	transcription start site region 149672	1533 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	1540 bp upstream