rs29750813 SNP Detail

Summary

• ID
  rs29750813
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84496894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTAAGGAG GTAGATCTGT CACTCAAAGG CTCCTGAGTC
  CAGGTGCATT TGGCCACACT GCAGTGCATG CTGCCCCTGT AGGTAGAGCC AATGGCTGCC
  W
  GAAGACTGTA GTGTCTTGGA CGTAGTGCTG AGTGGGTTGG GTACGGTGGT TCATGCCTAT
  AGTCCTAGCA CTAATCACAA ACTGTGGTGA GTTTTAGGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39537318	mCV23110588	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A	T
ss48383589	NES12275865	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		T	A	A	T	A	A	T	A
ss146132078	ENSMUSSNP1590498	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29750813					SNP	A	A	A	A	A	A	A	A	T	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48383589	NES12275865	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84496894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9566	CpG island 9566	444 bp distal
Gm36279	predicted gene, 36279	414 bp upstream
Gm56881	predicted gene, 56881	52 bp downstream
Rr333589	regulatory region 333589	within coordinates
Rr333590	regulatory region 333590	1307 bp proximal
Rr340271	regulatory region 340271	93 bp distal
Rr405496	regulatory region 405496	1292 bp downstream
Thada	thyroid adenoma associated	610 bp downstream
Tssr146046	transcription start site region 146046	840 bp downstream
Tssr149670	transcription start site region 149670	1709 bp upstream
Tssr149671	transcription start site region 149671	1567 bp upstream
Tssr149672	transcription start site region 149672	1512 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	1519 bp upstream