rs29751684 SNP Detail

Summary

• ID
  rs29751684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84496290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACATAGAGG AAGTCACTTC CTTCACCTTT GTGCCTGCTG
  GTTGGCCTGG CCTCCTCTCG GGGATGTGGG TGCAGCTCCT AGCCAAGGCT TCCCGCCTGT
  R
  CAGCCTTGGC CTGTCGAATC CTGCAACCTT CCTCCTTCTG CTGTGGGAGG CGCGGCATTG
  AATCTAAGCT TTGTGTGAGC TGCCGGAGGC GAGGCGGTGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48383590	NES12275864	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29751684					SNP	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48383590	NES12275864	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84496290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	1610 bp distal
Cpgi9566	CpG island 9566	within coordinates
Gm36279	predicted gene, 36279	1018 bp upstream
Gm56881	predicted gene, 56881	within coordinates
Rr333589	regulatory region 333589	511 bp proximal
Rr333590	regulatory region 333590	1911 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	688 bp downstream
Thada	thyroid adenoma associated	1214 bp downstream
Tssr146045	transcription start site region 146045	1745 bp downstream
Tssr146046	transcription start site region 146046	236 bp downstream
Tssr149663	transcription start site region 149663	1973 bp upstream
Tssr149664	transcription start site region 149664	1930 bp upstream
Tssr149665	transcription start site region 149665	1858 bp upstream
Tssr149666	transcription start site region 149666	1796 bp upstream
Tssr149667	transcription start site region 149667	1696 bp upstream
Tssr149668	transcription start site region 149668	1672 bp upstream
Tssr149669	transcription start site region 149669	1610 bp upstream
Tssr149670	transcription start site region 149670	1105 bp upstream
Tssr149671	transcription start site region 149671	963 bp upstream
Tssr149672	transcription start site region 149672	908 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	915 bp upstream