rs29751685 SNP Detail

Summary

• ID
  rs29751685
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84496276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGAGCAG TGTGGACATA GAGGAAGTCA CTTCCTTCAC
  CTTTGTGCCT GCTGGTTGGC CTGGCCTCCT CTCGGGGATG TGGGTGCAGC TCCTAGCCAA
  K
  GCTTCCCGCC TGTACAGCCT TGGCCTGTCG AATCCTGCAA CCTTCCTCCT TCTGCTGTGG
  GAGGCGCGGC ATTGAATCTA AGCTTTGTGT GAGCTGCCG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48383591	NES12275863	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29751685					SNP	G	G	G	G	G	T	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48383591	NES12275863	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84496276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	1596 bp distal
Cpgi9566	CpG island 9566	within coordinates
Gm36279	predicted gene, 36279	1032 bp upstream
Gm56881	predicted gene, 56881	within coordinates
Rr333589	regulatory region 333589	525 bp proximal
Rr333590	regulatory region 333590	1925 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	674 bp downstream
Thada	thyroid adenoma associated	1228 bp downstream
Tssr146045	transcription start site region 146045	1731 bp downstream
Tssr146046	transcription start site region 146046	222 bp downstream
Tssr149663	transcription start site region 149663	1959 bp upstream
Tssr149664	transcription start site region 149664	1916 bp upstream
Tssr149665	transcription start site region 149665	1844 bp upstream
Tssr149666	transcription start site region 149666	1782 bp upstream
Tssr149667	transcription start site region 149667	1682 bp upstream
Tssr149668	transcription start site region 149668	1658 bp upstream
Tssr149669	transcription start site region 149669	1596 bp upstream
Tssr149670	transcription start site region 149670	1091 bp upstream
Tssr149671	transcription start site region 149671	949 bp upstream
Tssr149672	transcription start site region 149672	894 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	901 bp upstream